Cytoscape 3.6.0 User ManualΒΆ
The Cytoscape User Manual copyright is owned by The Cytoscape Consortium, and is made available under the same GPL license as Cytoscape itself: LGPL 2.1, the GNU Lesser General Public License, version 2.1, February 1999 available in text at http://www.gnu.org/licenses/lgpl-2.1.html.
Copyright (c) 2001-2017 The Cytoscape Consortium
Table of Contents
- 1. Introduction
- 2. Launching Cytoscape
- 3. Command Line Arguments
- 4. Quick Tour of Cytoscape
- 5. Creating Networks
- 6. Nested Networks
- 7. Supported Network File Formats
- 8. Node and Edge Column Data
- 9. Column Data Functions and Equations
- 10. Finding and Filtering Nodes and Edges
- 11. Navigation and Layout
- 12. Styles
- 13. App Manager
- 14. Command Tool
- 15. Merge
- 16. NetworkAnalyzer
- 17. Cytoscape Preferences
- 18. Linkout
- 19. Panels
- 20. Rendering Engine
- 21. Export Your Data
- 22. Cytoscape and OpenCL (Computing on the GPU)
- 23. Cytoscape.js and Cytoscape
- 24. Cytoscape Automation
- 25. Cytoscape Privacy Policy
- 26. Basic Expression Analysis Tutorial